HPC Cluster Software Resources: Difference between revisions

From HPC Docs
Jump to navigation Jump to search
← Older editNewer edit →
No edit summary
No edit summary
Line 41: Line 41:
| JDK || <code>module add jdk/1.8</code> || - || Java. Note: OpenJDK is recommended over this version (Oracle Java) due to licensing issues
| JDK || <code>module add jdk/1.8</code> || - || Java. Note: OpenJDK is recommended over this version (Oracle Java) due to licensing issues
|-
|-
| Jellyfish || Example || Example || Example
| Jellyfish || <code>module add </code> || Example || Example
|-
|-
| Julia || Example || Example || Example
| Julia || <code>module add </code> || Example || Example
|-
|-
| LAMMPS || Example || Example || Example
| LAMMPS || <code>module add </code> || Example || Example
|-
|-
| Mathematica || Example || Example || Example
| Mathematica || <code>module add </code> || Example || Example
|-
|-
| Matlab || Example || Example || Example
| Matlab || <code>module add </code> || Example || Example
|-
|-
| MOPAC || Example || Example || Example
| MOPAC || <code>module add </code> || Example || Example
|-
|-
| MPMC || Example || Example || Example
| MPMC || <code>module add </code> || Example || Example
|-
|-
| MrBayes || Example || Example || Example
| MrBayes || <code>module add </code> || Example || Example
|-
|-
| NetPBM || Example || Example || Example
| NetPBM || <code>module add </code> || Example || Example
|-
|-
| NWChem || Example || Example || Example
| NWChem || Example || Example || Example

Revision as of 15:59, 21 May 2019

This page currently contains no content. (code411)

Application Name Module Command Application Website/Docs Notes
Amber16
Amber18		 module add amber/16
module add amber/18		 http://ambermd.org/Manuals.php Amber is a suite of biomolecular simulation programs
Athena module add athena/4.2 https://princetonuniversity.github.io/Athena-Cversion/ Athena is a grid-based code for astrophysical magnetohydrodynamics (MHD)
Athena++ module add athena++/1.0 https://princetonuniversity.github.io/athena/ Athena++ is a complete re-write of the Athena astrophysical magnetohydrodynamics (MHD) code in C++
Blast+ module add blast+/2.7.1 https://www.ncbi.nlm.nih.gov/books/NBK279690/ Basic Local Alignment Search Tool
Cassandra module add cassandra/1.2 https://cassandra.nd.edu/index.php/documentation Cassandra is an open source Monte Carlo package
cuda/8.0
cuda/9.2
cuda/10.0		 module add cuda/8.0
module add cuda/9.2
module add cuda/10.0		 https://docs.nvidia.com/cuda/ Default is CUDA 9.2 if using module add cuda
cuDNN module add cudnn/5.05
module add cudnn/5.1.10
module add cudnn/6.0.21		 https://docs.nvidia.com/deeplearning/sdk/cudnn-developer-guide/index.html -
ELSA Tutorial module add elsa-tutorial/1.0 TBA Used with ELSA SLURM tutorial
ESPResSo module add espresso/3.3.1 http://espressomd.org/wordpress/documentation/ Extensible Simulation Package for Research on Soft Matter
FASTX-Toolkit module add fastx/0.0.14 http://hannonlab.cshl.edu/fastx_toolkit/commandline.html FASTQ/A short-reads pre-processing tools
FFmpeg module add ffmpeg/2.8 https://ffmpeg.org/ffmpeg.html ffmpeg is a very fast video and audio converter
Garli module add garli/2.01 Website no longer accessible Genetic Algorithm for Rapid Likelihood Inference
Gaussian module add gaussian/16 http://gaussian.com/man/ Electronic structure modeling
GNUplot module add gnuplot/5.0.6 http://www.gnuplot.info/documentation.html Portable command-line driven graphing utility
Go module add go/1.11 https://golang.org/doc/ Go programming language
Gromacs module add gromacs/2018.3
module add gromacs+plumed/2018.4		 http://manual.gromacs.org/documentation/
https://www.plumed.org/doc-master/user-doc/html/index.html		 Versatile package to perform molecular dynamics
Hoomd-Blue module add hoomd-blue/2.1.6 https://hoomd-blue.readthedocs.io/en/stable/ General purpose particle simulation toolkit
JDK module add jdk/1.8 - Java. Note: OpenJDK is recommended over this version (Oracle Java) due to licensing issues
Jellyfish module add Example Example
Julia module add Example Example
LAMMPS module add Example Example
Mathematica module add Example Example
Matlab module add Example Example
MOPAC module add Example Example
MPMC module add Example Example
MrBayes module add Example Example
NetPBM module add Example Example
NWChem Example Example Example
Omnia Example Example Example
ParaView Example Example Example
pNetCDF Example Example Example
PrinSEQ Example Example Example
Python Example Example Example
R Example Example Example
RStudio Example Example Example
SageMath Example Example Example
SAS Example Example Example
SOAPDenovo2 Example Example Example
Sondovac Example Example Example
SOP Example Example Example
Spades Example Example Example
Swift Example Example Example
Transcriptomics Example Example Example
Trimmomatic Example Example Example
Trinity Example Example Example
VisIt Example Example Example
VMD Example Example Example
Retrieved from "https://docs.hpc.tcnj.edu/index.php?title=HPC_Cluster_Software_Resources&oldid=233"