HPC MUSE2022 Workshop1 - Revision history

Admin: /* Hands-On Lab #4 - The Final Exam */

2023-06-09T19:46:56Z

Hands-On Lab #4 - The Final Exam

← Older revision		Revision as of 19:46, 9 June 2023
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	# Change permissions on the <code>mpi-pi-numinteg</code> program while in the Linux shell to make it executable		# Change permissions on the <code>mpi-pi-numinteg</code> program while in the Linux shell to make it executable
	#* <code>chmod +x mpi-pi-numinteg</code>		#* <code>chmod +x mpi-pi-numinteg</code>
	# Run the job		# Run the job by submitting it from the Linux shell
	# Review the job.''jobnumber''.out file		# Review the job.''jobnumber''.out file

Admin: /* Hands-On Lab #4 - The Final Exam */

2023-06-09T19:45:23Z

Hands-On Lab #4 - The Final Exam

← Older revision		Revision as of 19:45, 9 June 2023
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	# Copy the <code>submit-mpi.sh</code> script from the <code>elsa-tutorial</code> folder		# Copy the <code>submit-mpi.sh</code> script from the <code>elsa-tutorial</code> folder
	# Edit the copy to make any necessary changes		# Edit the copy to make any necessary changes
	#* Change the command to run from <code>mdart 50000 10000</code> to <code>mpi-pi-numinteg</code>		#* Change the command to run from <code>mdart 50000 10000</code> to <code>./mpi-pi-numinteg</code>
	#* Use 2 nodes with 16 ntasks		#* Use 2 nodes with 16 ntasks
			# Change permissions on the <code>mpi-pi-numinteg</code> program while in the Linux shell to make it executable
			#* <code>chmod +x mpi-pi-numinteg</code>
	# Run the job		# Run the job
	# Review the job.''jobnumber''.out file		# Review the job.''jobnumber''.out file

Admin: /* Hands-On Lab #2 - Open a Terminal in Open OnDemand */

2022-06-15T15:23:38Z

Hands-On Lab #2 - Open a Terminal in Open OnDemand

← Older revision		Revision as of 15:23, 15 June 2022
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	# Using the Open OnDemand menu, go to <code>Clusters</code> and choose <code>_ELSA OpenHPC Cluster Shell Access</code>		# Using the Open OnDemand menu, go to <code>Clusters</code> and choose <code>_ELSA OpenHPC Cluster Shell Access</code>
	# Execute Linux commands at the terminal prompt, e.g. <code>ls</code>		# Execute Linux commands at the terminal prompt, e.g. <code>ls</code>
	# When you are done with the terminal, type <code>exit</code> at the command prompt and close the browser tab.		# When you are done with the terminal, type <code>exit</code> at the command prompt and close the browser tab
	Additional help for this tutorial can be found at [https://docs.hpc.tcnj.edu/index.php/HPC_Cluster_Getting_Started#Open_OnDemand Accessing the Cluster via SSH using Open OnDemand]		Additional help for this tutorial can be found at [https://docs.hpc.tcnj.edu/index.php/HPC_Cluster_Getting_Started#Open_OnDemand Accessing the Cluster via SSH using Open OnDemand]

Admin: /* Hands-On Lab #4 - The Final Exam */

2022-06-15T15:23:28Z

Hands-On Lab #4 - The Final Exam

← Older revision		Revision as of 15:23, 15 June 2022
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	=== Hands-On Lab #4 - The Final Exam ===		=== Hands-On Lab #4 - The Final Exam ===
	# Download the zip file from [https://owd.tcnj.edu/~ssivy/muse2022/another-pi.zip Another Pi Implementation]		# Download the zip file from [https://owd.tcnj.edu/~ssivy/muse2022/another-pi.zip Another Pi Implementation] to your computer
	# Unpack the zip on your local machine		# Unpack the zip on your local machine
	# Make a new folder in your ELSA cluster home directory (e.g. <code>workshop1</code>)		# Make a new folder in your ELSA cluster home directory (e.g. <code>workshop1</code>)

Admin: /* Hands-On Lab #3 - Running a Cluster Job */

2022-06-15T15:22:55Z

Hands-On Lab #3 - Running a Cluster Job

← Older revision		Revision as of 15:22, 15 June 2022
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	# Review the job.'''jobnumber'''.out file <code>cat job.####.out</code> or use the Open OnDemand file manager to view the contents		# Review the job.'''jobnumber'''.out file <code>cat job.####.out</code> or use the Open OnDemand file manager to view the contents
	# Run the other two jobs (these run much faster)		# Run the other two jobs (these run much faster)
			# Review the job output files for these jobs
	Additional help for this tutorial can be found at [https://docs.hpc.tcnj.edu/index.php/HPC_Cluster_Job_Scheduler#Submitting_Your_First_HPC_Job Submitting Your First HPC Job]		Additional help for this tutorial can be found at [https://docs.hpc.tcnj.edu/index.php/HPC_Cluster_Job_Scheduler#Submitting_Your_First_HPC_Job Submitting Your First HPC Job]

Admin: /* Hands-On Lab #3 - Running a Cluster Job */

2022-06-15T15:22:07Z

Hands-On Lab #3 - Running a Cluster Job

← Older revision		Revision as of 15:22, 15 June 2022
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	# Change to elsa-tutorial directory <code>cd elsa-tutorial</code>		# Change to elsa-tutorial directory <code>cd elsa-tutorial</code>
	# Look at the a submit scripts <code>cat submit-serial.sh</code>		# Look at the a submit scripts <code>cat submit-serial.sh</code>
	# Look at the other two submit scripts in the tutorial directory using either <code>cat</code> or the Open OnDemand file ~~browser~~		# Look at the other two submit scripts in the tutorial directory using either <code>cat</code> or the Open OnDemand file manager
	# Edit the three submit scripts to change the email address to your email address. Use either <code>nano</code> or the Open OnDemand edit file option in the file ~~browser~~		# Edit the three submit scripts to change the email address to your email address. Use either <code>nano</code> or the Open OnDemand edit file option in the file manager
	# Run the serial job <code>sbatch submit-serial.sh</code> (this one can take 2-3 minutes to complete)		# Run the serial job <code>sbatch submit-serial.sh</code> (this one can take 2-3 minutes to complete)
			# Review the job.'''jobnumber'''.out file <code>cat job.####.out</code> or use the Open OnDemand file manager to view the contents
	# Run the other two jobs (these run much faster)		# Run the other two jobs (these run much faster)
	Additional help for this tutorial can be found at [https://docs.hpc.tcnj.edu/index.php/HPC_Cluster_Job_Scheduler#Submitting_Your_First_HPC_Job Submitting Your First HPC Job]		Additional help for this tutorial can be found at [https://docs.hpc.tcnj.edu/index.php/HPC_Cluster_Job_Scheduler#Submitting_Your_First_HPC_Job Submitting Your First HPC Job]

Admin: /* MUSE HPC 2022 Workshop #1 */

2022-06-15T15:20:34Z

MUSE HPC 2022 Workshop #1

← Older revision		Revision as of 15:20, 15 June 2022
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	=== Hands-On Lab #4 - The Final Exam ===		=== Hands-On Lab #4 - The Final Exam ===
	# Download the zip file from		# Download the zip file from [https://owd.tcnj.edu/~ssivy/muse2022/another-pi.zip Another Pi Implementation]
	# Unpack the zip on your local machine		# Unpack the zip on your local machine
	# Make a new folder in your ELSA cluster home directory (e.g. <code>workshop1</code>)		# Make a new folder in your ELSA cluster home directory (e.g. <code>workshop1</code>)

Admin: /* Hands-On Lab #4 - The Final Exam */

2022-06-15T14:50:14Z

Hands-On Lab #4 - The Final Exam

← Older revision		Revision as of 14:50, 15 June 2022
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	# Download the zip file from		# Download the zip file from
	# Unpack the zip on your local machine		# Unpack the zip on your local machine
	# Make a new folder in your ELSA cluster home directory (e.g. ~~called~~ <code>workshop1</code>)		# Make a new folder in your ELSA cluster home directory (e.g. <code>workshop1</code>)
	# Upload at least the <code>mpi-pi-numinteg</code> program (optionally upload the other files) to the folder you created above		# Upload at least the <code>mpi-pi-numinteg</code> program (optionally upload the other files) to the folder you created above
	# Copy the <code>submit-mpi.sh</code> script from the <code>elsa-tutorial</code> folder		# Copy the <code>submit-mpi.sh</code> script from the <code>elsa-tutorial</code> folder

Admin: /* MUSE HPC 2022 Workshop #1 */

2022-06-15T14:49:13Z

MUSE HPC 2022 Workshop #1

← Older revision		Revision as of 14:49, 15 June 2022
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	Additional help for this tutorial can be found at [https://docs.hpc.tcnj.edu/index.php/HPC_Cluster_Getting_Started#Open_OnDemand Accessing the Cluster via SSH using Open OnDemand]		Additional help for this tutorial can be found at [https://docs.hpc.tcnj.edu/index.php/HPC_Cluster_Getting_Started#Open_OnDemand Accessing the Cluster via SSH using Open OnDemand]

	=== Hands-On Lab #3 ===		=== Hands-On Lab #3 - Running a Cluster Job ===
	# Open a terminal shell		# Open a terminal shell
	# Add the ELSA tutorial module <code>module add elsa-tutorial</code>		# Add the ELSA tutorial module <code>module add elsa-tutorial</code>
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	Additional help for this tutorial can be found at [https://docs.hpc.tcnj.edu/index.php/HPC_Cluster_Job_Scheduler#Submitting_Your_First_HPC_Job Submitting Your First HPC Job]		Additional help for this tutorial can be found at [https://docs.hpc.tcnj.edu/index.php/HPC_Cluster_Job_Scheduler#Submitting_Your_First_HPC_Job Submitting Your First HPC Job]

	=== Hands-On Lab #4 ===		=== Hands-On Lab #4 - The Final Exam ===
	# Download the zip file from		# Download the zip file from
	# Unpack the zip on your local machine		# Unpack the zip on your local machine

Admin: /* Hands-On Lab #4 */

2022-06-15T14:40:41Z

Hands-On Lab #4

← Older revision		Revision as of 14:40, 15 June 2022
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	# Download the zip file from		# Download the zip file from
	# Unpack the zip on your local machine		# Unpack the zip on your local machine
	# Make a new folder on in your ELSA cluster home directory (e.g. called <code>workshop1</code>)		# Make a new folder in your ELSA cluster home directory (e.g. called <code>workshop1</code>)
	# Upload at least the <code>mpi-pi-numinteg</code> program (optionally upload the other files) to the folder you created above		# Upload at least the <code>mpi-pi-numinteg</code> program (optionally upload the other files) to the folder you created above
	# Copy the <code>submit-mpi.sh</code> script from the <code>elsa-tutorial</code> folder		# Copy the <code>submit-mpi.sh</code> script from the <code>elsa-tutorial</code> folder
	# Edit the copy ~~making~~ any necessary changes		# Edit the copy to make any necessary changes
	#* Change the command to run from <code>mdart 50000 10000</code> to <code>mpi-pi-numinteg</code>		#* Change the command to run from <code>mdart 50000 10000</code> to <code>mpi-pi-numinteg</code>
	#* Use 2 nodes with 16 ntasks		#* Use 2 nodes with 16 ntasks
	# Run the job		# Run the job
	# Review the job.''jobnumber''.out file		# Review the job.''jobnumber''.out file